Indonesia’s National Human Rights Commission has strongly condemned the country’s military following the deaths of 12 civilians — including women and children — during a security operation against separatist rebels in Papua province last week, as the commission launched a formal investigation into one of the most serious civilian casualty incidents in the resource-rich region in recent years.

The commission said over the weekend that the 12 people were shot dead during a military operation against rebels in central Papua on Tuesday, with dozens of others sustaining serious injuries. It was not immediately clear whether the civilians were killed by Indonesian military fire, rebel fire, or both.

What the Rights Commission Said

Commission chief Anis Hidayah issued a direct condemnation of the operation. “We condemn the enforcement operation against Papuan rebels that resulted in civilian casualties,” Hidayah said in a statement. “All forms of attacks against civilians, whether in situations of war or otherwise, carried out by state or non-state actors, constitute violations of human rights and international humanitarian law.”

The commission called on Indonesia’s military to re-evaluate its operations against Papuan rebels and said it was actively investigating the deaths. The framing of the condemnation — explicitly covering both state and non-state actors — leaves open the question of who fired the fatal shots while making clear that the commission holds the military’s operational conduct accountable regardless.

The Military’s Position

The military’s response has been one of partial acknowledgement and partial denial. The Habema task force, which carried out Tuesday’s operation in the Puncak region after receiving civilian reports about rebel presence in their village, said four rebels were killed during the operation in Kembru village.

Task force spokesman Wirya Arthadiguna acknowledged a report of one child dying from a gunshot but said this occurred in a nearby village during what he described as an unrelated incident. “No military personnel were present at that village at the time of the shooting of the child, and the two incidents took place at different locations and times and are not connected,” Wirya said.

The military spokesman for Papua said he had not received any information regarding civilian fatalities beyond the single child case — a position that stands in direct contradiction to the rights commission’s finding of 12 deaths including women and children, and to the statement from the Papuan rebel group which said 12 civilians were killed by military operations.

Papua’s Long-Running Conflict and Its Context

Papua’s separatist conflict has simmered for decades, rooted in the circumstances under which the region was brought under Indonesian control. In 1969, a UN-overseen vote saw approximately 1,000 Papuans out of a population of some 800,000 vote to integrate into Indonesia — a process widely criticised by independence activists as non-representative and condemned by many as the “Act of Free Choice” in name only. Papuan independence movements have called for fresh polls consistently since then, a demand Jakarta has rejected on the basis of UN acceptance of Indonesian sovereignty over the region.

The region is among the most resource-rich in Southeast Asia, home to the world’s second-largest gold and copper mine — the Grasberg mine operated by Freeport-McMoRan — making it a site of both significant economic interest and persistent political tension. Security operations against the West Papua National Liberation Army and affiliated groups have resulted in repeated civilian casualty allegations over the years, with human rights organisations documenting a pattern of restricted access for journalists and independent investigators that makes independent verification of specific incidents difficult.

India Angle and Regional Significance

For India, the Papua civilian deaths carry significance at the level of regional multilateral architecture. India and Indonesia are both members of the G20 and maintain a Comprehensive Strategic Partnership. India’s consistent position on sovereignty and territorial integrity — which aligns with Jakarta’s stance on Papua — has kept New Delhi from commenting publicly on the separatist movement. However, the rights commission’s findings and the military’s denial create the kind of human rights documentation trail that will be raised in international forums including the UN Human Rights Council, where India holds a seat.

The incident also comes at a moment of heightened global scrutiny of civilian casualties in conflict zones, with the Iran war having generated intensive international debate about the laws of armed conflict and the protection of civilian infrastructure and populations. The Papua deaths will be examined within that broader context by international human rights bodies even as Indonesia’s own commission leads the domestic investigation.

The investigation is ongoing. The commission has not announced a timeline for its findings.

Disclaimer: This article is based on published news reports and official statements. The circumstances of the deaths are subject to ongoing investigation by Indonesia’s National Human Rights Commission.